SpatialSEIR Namespace Reference

Classes
struct	compartmentArgs
class	CompartmentalModelMatrix
struct	covariateArgs
class	CovariateMatrix
struct	distanceArgs
struct	scaledDistanceArgs
class	DistanceMatrix
struct	LocationTrace
struct	TimeLocationTrace
class	IOProvider
class	IterationTask
class	SetCompartmentSamplingIndicesTask
class	PerformDecorrelationStep
class	PerformHybridSE_EI_UpdateStep
class	Sampler
class	ParameterNullSampler
class	ParameterHybridSampler
class	CompartmentMetropolisSampler
class	CompartmentMetropolisSampler_OCL
class	IndexedCompartmentMetropolisSampler
class	IndexedCompartmentSliceSampler
class	CompartmentBinomialMetropolisSampler
class	IndexedCompartmentBinomialMetropolisSampler
class	CompartmentBinomialSliceSampler
class	InitCompartmentMetropolisSampler
class	InitCompartmentMetropolisSampler_OCL
class	IndexedInitCompartmentMetropolisSampler
class	IndexedInitCompartmentSliceSampler
class	ParameterSingleMetropolisSampler
class	ParameterJointMetropolisSampler
class	ParameterJointMetropolisSampler_OCL
class	ParameterJointSliceSampler
class	ParameterDecorrelationSampler
struct	modelConfiguration
class	ModelContext
class	OCLProvider
class	RandomNumberProvider
class	FC_Beta
class	FC_Beta_P_RS
class	FC_E0
class	FC_E_Star
class	FC_Gamma_EI
class	FC_Gamma_IR
class	FC_I0
class	FC_R0
class	FC_R_Star
class	FC_Rho
class	FC_S0
class	FC_S_Star
struct	priorControl
	struct containing hyperparameters for beta, betaP_RS, P_EI, and P_IR More...
struct	sliceParameters
	struct containing initial slice sampling tuning parameters. More...
class	InitData
	Simple class containing the starting compartment sizes. More...
class	FullConditional
class	CompartmentFullConditional
class	ParameterFullConditional
class	InitCompartmentFullConditional
class	FC_I_Star_overdispersed
class	FC_Phi

Typedefs
typedef Eigen::Matrix< double, Eigen::Dynamic, Eigen::Dynamic >	MatrixType
typedef Eigen::Map< MatrixType, Eigen::ColMajor >	MatrixMapType
typedef Eigen::Matrix< int, Eigen::Dynamic, Eigen::Dynamic >	IntMatrixType
typedef Eigen::Map < IntMatrixType, Eigen::ColMajor >	IntMatrixMapType

Functions
double	dbeta (double x, double a, double b)

Detailed Description

LSSCout wraps either std::cout or Rcpp::Rcout, depending on the build time variable "LSS USE STDIO"

Typedef Documentation

typedef Eigen::Map<IntMatrixType, Eigen::ColMajor> SpatialSEIR::IntMatrixMapType

typedef Eigen::Matrix<int, Eigen::Dynamic, Eigen::Dynamic> SpatialSEIR::IntMatrixType

typedef Eigen::Map<MatrixType, Eigen::ColMajor> SpatialSEIR::MatrixMapType

typedef Eigen::Matrix<double,Eigen::Dynamic,Eigen::Dynamic> SpatialSEIR::MatrixType

Function Documentation

double SpatialSEIR::dbeta	(	double	x,
		double	a,
		double	b
	)