SpatialSEIR::CompartmentFullConditional Class Reference

#include <LSS_FullConditional.hpp>

Inheritance diagram for SpatialSEIR::CompartmentFullConditional:

Public Member Functions
virtual	~CompartmentFullConditional ()
virtual int	evalCPU ()=0
virtual int	evalCPU (int i, int j)=0
virtual int	evalOCL ()=0
virtual void	sample (int verbose)=0
virtual long double	getValue ()=0
virtual void	setValue (long double value)=0
virtual int	calculateRelevantCompartments ()=0
virtual int	calculateRelevantCompartments (int i, int j)=0
virtual int	calculateRelevantCompartments_OCL ()=0
void	updateSamplingParameters (double desiredRatio, double targetWidth, double proportionChange)
int	getFullConditionalType ()
Public Member Functions inherited from SpatialSEIR::FullConditional
virtual	~FullConditional ()
double	acceptanceRatio ()
void	setSamplerType (int type)

Public Attributes
double *	steadyStateConstraintPrecision
Public Attributes inherited from SpatialSEIR::FullConditional
double *	sliceWidth
std::vector< Sampler * > *	samplers
Sampler **	currentSampler
int *	samples
int *	accepted

Detailed Description

The CompartmentFullConditional class inherits the structure of FullConditional, and provides general sampling methods which apply to all compartment full conditional distributions. These are:

1. FC_S_Star, the transition compartment from recovered to susceptible
2. FC_E_Star, the transition compartment from susceptible to exposed
3. FC_R_Star, the transition compartment from infectious to recovered

Constructor & Destructor Documentation

virtual SpatialSEIR::CompartmentFullConditional::~CompartmentFullConditional ( )

inlinevirtual

Member Function Documentation

virtual int SpatialSEIR::CompartmentFullConditional::calculateRelevantCompartments ( )

pure virtual

Implements SpatialSEIR::FullConditional.

Implemented in SpatialSEIR::FC_R_Star, SpatialSEIR::FC_E_Star, SpatialSEIR::FC_S_Star, and SpatialSEIR::FC_I_Star_overdispersed.

virtual int SpatialSEIR::CompartmentFullConditional::calculateRelevantCompartments ( int  i, int  j  )

pure virtual

Implemented in SpatialSEIR::FC_R_Star, SpatialSEIR::FC_E_Star, SpatialSEIR::FC_S_Star, and SpatialSEIR::FC_I_Star_overdispersed.

virtual int SpatialSEIR::CompartmentFullConditional::calculateRelevantCompartments_OCL ( )

pure virtual

Implements SpatialSEIR::FullConditional.

Implemented in SpatialSEIR::FC_R_Star, SpatialSEIR::FC_E_Star, SpatialSEIR::FC_S_Star, and SpatialSEIR::FC_I_Star_overdispersed.

virtual int SpatialSEIR::CompartmentFullConditional::evalCPU ( )

pure virtual

Implemented in SpatialSEIR::FC_R_Star, SpatialSEIR::FC_E_Star, SpatialSEIR::FC_S_Star, and SpatialSEIR::FC_I_Star_overdispersed.

virtual int SpatialSEIR::CompartmentFullConditional::evalCPU ( int  i, int  j  )

pure virtual

Implemented in SpatialSEIR::FC_R_Star, SpatialSEIR::FC_E_Star, SpatialSEIR::FC_S_Star, and SpatialSEIR::FC_I_Star_overdispersed.

virtual int SpatialSEIR::CompartmentFullConditional::evalOCL ( )

pure virtual

Implemented in SpatialSEIR::FC_R_Star, SpatialSEIR::FC_E_Star, SpatialSEIR::FC_S_Star, and SpatialSEIR::FC_I_Star_overdispersed.

int SpatialSEIR::CompartmentFullConditional::getFullConditionalType ( )

virtual

Identify as compartment full conditional

Implements SpatialSEIR::FullConditional.

virtual long double SpatialSEIR::CompartmentFullConditional::getValue ( )

pure virtual

Implements SpatialSEIR::FullConditional.

Implemented in SpatialSEIR::FC_R_Star, SpatialSEIR::FC_E_Star, SpatialSEIR::FC_S_Star, and SpatialSEIR::FC_I_Star_overdispersed.

virtual void SpatialSEIR::CompartmentFullConditional::sample ( int  verbose )

pure virtual

Implements SpatialSEIR::FullConditional.

Implemented in SpatialSEIR::FC_R_Star, SpatialSEIR::FC_E_Star, SpatialSEIR::FC_S_Star, and SpatialSEIR::FC_I_Star_overdispersed.

virtual void SpatialSEIR::CompartmentFullConditional::setValue ( long double  value )

pure virtual

Implements SpatialSEIR::FullConditional.

Implemented in SpatialSEIR::FC_R_Star, SpatialSEIR::FC_E_Star, SpatialSEIR::FC_S_Star, and SpatialSEIR::FC_I_Star_overdispersed.

void SpatialSEIR::CompartmentFullConditional::updateSamplingParameters ( double  desiredRatio, double  targetWidth, double  proportionChange  )

virtual

Implements SpatialSEIR::FullConditional.

Member Data Documentation

double* SpatialSEIR::CompartmentFullConditional::steadyStateConstraintPrecision

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The documentation for this class was generated from the following files:

• libSpatialSEIR/include/FullConditionals/LSS_FullConditional.hpp
• libSpatialSEIR/src/FullConditionals/FullConditional.cpp