|
libspatialSEIR
0.1
Bayesian Spatial SEIR Modeling
|
#include <LSS_FC_Beta_P_RS.hpp>
Public Member Functions | |
| FC_Beta_P_RS (ModelContext *_context, CompartmentalModelMatrix *_S_star, CompartmentalModelMatrix *_R, CovariateMatrix *_X, InitData *_A0, double *_p_rs, double *_beta_p_rs, double _tausq, double _sliceWidth) | |
| ~FC_Beta_P_RS () | |
| virtual double | evalPrior () |
| virtual int | evalCPU () |
| virtual int | evalOCL () |
| virtual void | sample (int verbose) |
| virtual long double | getValue () |
| virtual void | setValue (long double val) |
| virtual int | calculateRelevantCompartments () |
| virtual int | calculateRelevantCompartments_OCL () |
Public Member Functions inherited from SpatialSEIR::ParameterFullConditional | |
| virtual | ~ParameterFullConditional () |
| virtual double | acceptanceRatio (int i) |
| void | updateSamplingParameters (double desiredRatio, double targetWidth, double proportionChange) |
| int | getFullConditionalType () |
Public Member Functions inherited from SpatialSEIR::FullConditional | |
| virtual | ~FullConditional () |
| double | acceptanceRatio () |
| void | setSamplerType (int type) |
Public Attributes | |
| ModelContext ** | context |
| CompartmentalModelMatrix ** | S_star |
| CompartmentalModelMatrix ** | R |
| CovariateMatrix ** | X |
| InitData ** | A0 |
| double ** | beta_p_rs |
| double ** | p_rs |
| double * | tausq |
| long double * | value |
Public Attributes inherited from SpatialSEIR::ParameterFullConditional | |
| int * | varLen |
Public Attributes inherited from SpatialSEIR::FullConditional | |
| double * | sliceWidth |
| std::vector< Sampler * > * | samplers |
| Sampler ** | currentSampler |
| int * | samples |
| int * | accepted |
FC_Beta_P_RS gives the full conditional distribution of beta_p_rs, the vector of regression parameters capturing the probability that an individual transitions from R to S, the removed/recovered category to the susceptible category.
| SpatialSEIR::FC_Beta_P_RS::FC_Beta_P_RS | ( | ModelContext * | _context, |
| CompartmentalModelMatrix * | _S_star, | ||
| CompartmentalModelMatrix * | _R, | ||
| CovariateMatrix * | _X, | ||
| InitData * | _A0, | ||
| double * | _p_rs, | ||
| double * | _beta_p_rs, | ||
| double | _tausq, | ||
| double | _sliceWidth | ||
| ) |
| SpatialSEIR::FC_Beta_P_RS::~FC_Beta_P_RS | ( | ) |
|
virtual |
Implements SpatialSEIR::ParameterFullConditional.
|
virtual |
Implements SpatialSEIR::ParameterFullConditional.
|
virtual |
Implements SpatialSEIR::ParameterFullConditional.
|
virtual |
Implements SpatialSEIR::ParameterFullConditional.
|
virtual |
|
virtual |
Implements SpatialSEIR::ParameterFullConditional.
|
virtual |
Implements SpatialSEIR::ParameterFullConditional.
|
virtual |
Implements SpatialSEIR::ParameterFullConditional.
| InitData** SpatialSEIR::FC_Beta_P_RS::A0 |
| double** SpatialSEIR::FC_Beta_P_RS::beta_p_rs |
| ModelContext** SpatialSEIR::FC_Beta_P_RS::context |
| double** SpatialSEIR::FC_Beta_P_RS::p_rs |
| CompartmentalModelMatrix** SpatialSEIR::FC_Beta_P_RS::R |
| CompartmentalModelMatrix** SpatialSEIR::FC_Beta_P_RS::S_star |
| double* SpatialSEIR::FC_Beta_P_RS::tausq |
| long double* SpatialSEIR::FC_Beta_P_RS::value |
| CovariateMatrix** SpatialSEIR::FC_Beta_P_RS::X |
1.8.6