SpatialSEIR::ParameterFullConditional Class Reference

#include <LSS_FullConditional.hpp>

Inheritance diagram for SpatialSEIR::ParameterFullConditional:

Public Member Functions
virtual	~ParameterFullConditional ()
virtual int	evalCPU ()=0
virtual int	evalOCL ()=0
virtual void	sample (int verbose)=0
virtual long double	getValue ()=0
virtual void	setValue (long double value)=0
virtual int	calculateRelevantCompartments ()=0
virtual int	calculateRelevantCompartments_OCL ()=0
virtual double	acceptanceRatio (int i)
void	updateSamplingParameters (double desiredRatio, double targetWidth, double proportionChange)
int	getFullConditionalType ()
Public Member Functions inherited from SpatialSEIR::FullConditional
virtual	~FullConditional ()
double	acceptanceRatio ()
void	setSamplerType (int type)

Public Attributes
int *	varLen
Public Attributes inherited from SpatialSEIR::FullConditional
double *	sliceWidth
std::vector< Sampler * > *	samplers
Sampler **	currentSampler
int *	samples
int *	accepted

Detailed Description

The ParameterFullConditional class inherits the structure of FullConditional, and provides sampling methods for all of the non-compartment parameters. These include the following:

1. FC_Beta, the full conditional for the parameters controlling the exposure probability
2. FC_Beta_P_RS, the full conditional for the parameters controlling the reinfection probability
3. FC_Rho, the full conditional for the spatial dependence parameter
4. FC_P_EI, the full conditional for the E to I transition probability
5. FC_P_IR, the full conditional for the I to R transition probability

Constructor & Destructor Documentation

virtual SpatialSEIR::ParameterFullConditional::~ParameterFullConditional ( )

inlinevirtual

Member Function Documentation

double SpatialSEIR::ParameterFullConditional::acceptanceRatio ( int  i )

virtual

virtual int SpatialSEIR::ParameterFullConditional::calculateRelevantCompartments ( )

pure virtual

Implements SpatialSEIR::FullConditional.

Implemented in SpatialSEIR::FC_Beta, SpatialSEIR::FC_Beta_P_RS, SpatialSEIR::FC_Gamma_IR, SpatialSEIR::FC_Rho, SpatialSEIR::FC_Gamma_EI, and SpatialSEIR::FC_Phi.

virtual int SpatialSEIR::ParameterFullConditional::calculateRelevantCompartments_OCL ( )

pure virtual

Implements SpatialSEIR::FullConditional.

Implemented in SpatialSEIR::FC_Beta, SpatialSEIR::FC_Beta_P_RS, SpatialSEIR::FC_Gamma_IR, SpatialSEIR::FC_Rho, SpatialSEIR::FC_Gamma_EI, and SpatialSEIR::FC_Phi.

virtual int SpatialSEIR::ParameterFullConditional::evalCPU ( )

pure virtual

Implemented in SpatialSEIR::FC_Beta, SpatialSEIR::FC_Beta_P_RS, SpatialSEIR::FC_Gamma_IR, SpatialSEIR::FC_Rho, SpatialSEIR::FC_Gamma_EI, and SpatialSEIR::FC_Phi.

virtual int SpatialSEIR::ParameterFullConditional::evalOCL ( )

pure virtual

Implemented in SpatialSEIR::FC_Beta, SpatialSEIR::FC_Beta_P_RS, SpatialSEIR::FC_Gamma_IR, SpatialSEIR::FC_Rho, SpatialSEIR::FC_Gamma_EI, and SpatialSEIR::FC_Phi.

int SpatialSEIR::ParameterFullConditional::getFullConditionalType ( )

virtual

Identify as parameter full conditional

Implements SpatialSEIR::FullConditional.

virtual long double SpatialSEIR::ParameterFullConditional::getValue ( )

pure virtual

Implements SpatialSEIR::FullConditional.

Implemented in SpatialSEIR::FC_Beta, SpatialSEIR::FC_Beta_P_RS, SpatialSEIR::FC_Gamma_IR, SpatialSEIR::FC_Rho, SpatialSEIR::FC_Gamma_EI, and SpatialSEIR::FC_Phi.

virtual void SpatialSEIR::ParameterFullConditional::sample ( int  verbose )

pure virtual

Implements SpatialSEIR::FullConditional.

Implemented in SpatialSEIR::FC_Beta, SpatialSEIR::FC_Beta_P_RS, SpatialSEIR::FC_Gamma_IR, SpatialSEIR::FC_Rho, SpatialSEIR::FC_Gamma_EI, and SpatialSEIR::FC_Phi.

virtual void SpatialSEIR::ParameterFullConditional::setValue ( long double  value )

pure virtual

Implements SpatialSEIR::FullConditional.

Implemented in SpatialSEIR::FC_Beta, SpatialSEIR::FC_Beta_P_RS, SpatialSEIR::FC_Gamma_IR, SpatialSEIR::FC_Rho, SpatialSEIR::FC_Gamma_EI, and SpatialSEIR::FC_Phi.

void SpatialSEIR::ParameterFullConditional::updateSamplingParameters ( double  desiredRatio, double  targetWidth, double  proportionChange  )

virtual

Implements SpatialSEIR::FullConditional.

Member Data Documentation

int* SpatialSEIR::ParameterFullConditional::varLen

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The documentation for this class was generated from the following files:

• libSpatialSEIR/include/FullConditionals/LSS_FullConditional.hpp
• libSpatialSEIR/src/FullConditionals/FullConditional.cpp