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libspatialSEIR
0.1
Bayesian Spatial SEIR Modeling
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#include <LSS_FC_S_star.hpp>
Public Member Functions | |
| FC_S_Star (ModelContext *_context, CompartmentalModelMatrix *_S_star, CompartmentalModelMatrix *_S, CompartmentalModelMatrix *_R, CompartmentalModelMatrix *_E_star, CompartmentalModelMatrix *_R_star, InitData *_A0, CovariateMatrix *_X, double *_p_se, double *_p_rs, double *_beta, double *_rho, double _steadyStateConstraintPrecision, double sliceWidth) | |
| virtual int | evalCPU () |
| virtual int | evalCPU (int i, int j) |
| virtual int | evalOCL () |
| virtual void | sample (int verbose) |
| virtual long double | getValue () |
| virtual void | setValue (long double val) |
| virtual int | calculateRelevantCompartments () |
| virtual int | calculateRelevantCompartments (int i, int j) |
| virtual int | calculateRelevantCompartments_OCL () |
| virtual | ~FC_S_Star () |
Public Member Functions inherited from SpatialSEIR::CompartmentFullConditional | |
| virtual | ~CompartmentFullConditional () |
| void | updateSamplingParameters (double desiredRatio, double targetWidth, double proportionChange) |
| int | getFullConditionalType () |
Public Member Functions inherited from SpatialSEIR::FullConditional | |
| virtual | ~FullConditional () |
| double | acceptanceRatio () |
| void | setSamplerType (int type) |
Public Attributes | |
| ModelContext ** | context |
| CompartmentalModelMatrix ** | S_star |
| CompartmentalModelMatrix ** | S |
| CompartmentalModelMatrix ** | R |
| CompartmentalModelMatrix ** | E_star |
| CompartmentalModelMatrix ** | R_star |
| InitData ** | A0 |
| CovariateMatrix ** | X |
| double ** | p_se |
| double ** | p_rs |
| double ** | beta |
| double ** | rho |
| long double * | value |
| double * | steadyStateConstraintPrecision |
Public Attributes inherited from SpatialSEIR::CompartmentFullConditional | |
| double * | steadyStateConstraintPrecision |
Public Attributes inherited from SpatialSEIR::FullConditional | |
| double * | sliceWidth |
| std::vector< Sampler * > * | samplers |
| Sampler ** | currentSampler |
| int * | samples |
| int * | accepted |
FC_S_Star gives the full conditional distribution of S_star, the transition matrix capturing individuals moving from the removed/recovered category to the susceptible category.
| SpatialSEIR::FC_S_Star::FC_S_Star | ( | ModelContext * | _context, |
| CompartmentalModelMatrix * | _S_star, | ||
| CompartmentalModelMatrix * | _S, | ||
| CompartmentalModelMatrix * | _R, | ||
| CompartmentalModelMatrix * | _E_star, | ||
| CompartmentalModelMatrix * | _R_star, | ||
| InitData * | _A0, | ||
| CovariateMatrix * | _X, | ||
| double * | _p_se, | ||
| double * | _p_rs, | ||
| double * | _beta, | ||
| double * | _rho, | ||
| double | _steadyStateConstraintPrecision, | ||
| double | sliceWidth | ||
| ) |
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virtual |
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virtual |
Implements SpatialSEIR::CompartmentFullConditional.
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virtual |
Implements SpatialSEIR::CompartmentFullConditional.
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virtual |
Implements SpatialSEIR::CompartmentFullConditional.
|
virtual |
Implements SpatialSEIR::CompartmentFullConditional.
|
virtual |
Implements SpatialSEIR::CompartmentFullConditional.
|
virtual |
Implements SpatialSEIR::CompartmentFullConditional.
|
virtual |
Implements SpatialSEIR::CompartmentFullConditional.
|
virtual |
Implements SpatialSEIR::CompartmentFullConditional.
|
virtual |
Implements SpatialSEIR::CompartmentFullConditional.
| InitData** SpatialSEIR::FC_S_Star::A0 |
| double** SpatialSEIR::FC_S_Star::beta |
| ModelContext** SpatialSEIR::FC_S_Star::context |
| CompartmentalModelMatrix** SpatialSEIR::FC_S_Star::E_star |
| double** SpatialSEIR::FC_S_Star::p_rs |
| double** SpatialSEIR::FC_S_Star::p_se |
| CompartmentalModelMatrix** SpatialSEIR::FC_S_Star::R |
| CompartmentalModelMatrix** SpatialSEIR::FC_S_Star::R_star |
| double** SpatialSEIR::FC_S_Star::rho |
| CompartmentalModelMatrix** SpatialSEIR::FC_S_Star::S |
| CompartmentalModelMatrix** SpatialSEIR::FC_S_Star::S_star |
| double* SpatialSEIR::FC_S_Star::steadyStateConstraintPrecision |
| long double* SpatialSEIR::FC_S_Star::value |
| CovariateMatrix** SpatialSEIR::FC_S_Star::X |
1.8.6