libspatialSEIR  0.1
Bayesian Spatial SEIR Modeling
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SpatialSEIR::FC_S0 Class Reference

#include <LSS_FC_S0.hpp>

Inheritance diagram for SpatialSEIR::FC_S0:
SpatialSEIR::InitCompartmentFullConditional SpatialSEIR::FullConditional

Public Member Functions

 FC_S0 (ModelContext *_context, CompartmentalModelMatrix *_S, CompartmentalModelMatrix *_E, CompartmentalModelMatrix *_E_star, CompartmentalModelMatrix *_I_star, InitData *_A0, double *_p_se, double *_p_ei, double sliceWidth)
 
virtual ~FC_S0 ()
 
virtual int evalCPU ()
 
virtual int evalOCL ()
 
virtual void sample (int verbose)
 
virtual long double getValue ()
 
virtual void setValue (long double value)
 
virtual int calculateRelevantCompartments ()
 
virtual int calculateRelevantCompartments_OCL ()
 
- Public Member Functions inherited from SpatialSEIR::InitCompartmentFullConditional
virtual ~InitCompartmentFullConditional ()
 
void updateSamplingParameters (double desiredRatio, double targetWidth, double proportionChange)
 
int getFullConditionalType ()
 
- Public Member Functions inherited from SpatialSEIR::FullConditional
virtual ~FullConditional ()
 
double acceptanceRatio ()
 
void setSamplerType (int type)
 

Public Attributes

ModelContext ** context
 
CompartmentalModelMatrix ** S
 
CompartmentalModelMatrix ** E
 
CompartmentalModelMatrix ** E_star
 
CompartmentalModelMatrix ** I_star
 
InitData ** A0
 
double ** p_se
 
double ** p_ei
 
long double * value
 
- Public Attributes inherited from SpatialSEIR::FullConditional
double * sliceWidth
 
std::vector< Sampler * > * samplers
 
Sampler ** currentSampler
 
int * samples
 
int * accepted
 

Detailed Description

FC_S0 gives the full conditional distribution for the vector of initially susceptible individuals.

Constructor & Destructor Documentation

SpatialSEIR::FC_S0::FC_S0 ( ModelContext _context,
CompartmentalModelMatrix _S,
CompartmentalModelMatrix _E,
CompartmentalModelMatrix _E_star,
CompartmentalModelMatrix _I_star,
InitData _A0,
double *  _p_se,
double *  _p_ei,
double  sliceWidth 
)
SpatialSEIR::FC_S0::~FC_S0 ( )
virtual

Member Function Documentation

int SpatialSEIR::FC_S0::calculateRelevantCompartments ( )
virtual
int SpatialSEIR::FC_S0::calculateRelevantCompartments_OCL ( )
virtual
int SpatialSEIR::FC_S0::evalCPU ( )
virtual
int SpatialSEIR::FC_S0::evalOCL ( )
virtual
long double SpatialSEIR::FC_S0::getValue ( )
virtual
void SpatialSEIR::FC_S0::sample ( int  verbose)
virtual
void SpatialSEIR::FC_S0::setValue ( long double  value)
virtual

Member Data Documentation

InitData** SpatialSEIR::FC_S0::A0
ModelContext** SpatialSEIR::FC_S0::context
CompartmentalModelMatrix** SpatialSEIR::FC_S0::E
CompartmentalModelMatrix** SpatialSEIR::FC_S0::E_star
CompartmentalModelMatrix** SpatialSEIR::FC_S0::I_star
double** SpatialSEIR::FC_S0::p_ei
double** SpatialSEIR::FC_S0::p_se
CompartmentalModelMatrix** SpatialSEIR::FC_S0::S
long double* SpatialSEIR::FC_S0::value

The documentation for this class was generated from the following files: