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libspatialSEIR
0.1
Bayesian Spatial SEIR Modeling
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#include <LSS_FC_Gamma_EI.hpp>
Public Member Functions | |
| FC_Gamma_EI (ModelContext *_context, CompartmentalModelMatrix *_I_star, CompartmentalModelMatrix *_E, InitData *_A0, double *_p_ei, double *_gamma_ei, double _priorAlpha, double _priorBeta, double sliceWidth) | |
| virtual double | evalPrior () |
| virtual int | evalCPU () |
| virtual int | evalOCL () |
| virtual void | sample (int verbose) |
| virtual long double | getValue () |
| virtual void | setValue (long double val) |
| virtual int | calculateRelevantCompartments () |
| virtual int | calculateRelevantCompartments_OCL () |
| ~FC_Gamma_EI () | |
Public Member Functions inherited from SpatialSEIR::ParameterFullConditional | |
| virtual | ~ParameterFullConditional () |
| virtual double | acceptanceRatio (int i) |
| void | updateSamplingParameters (double desiredRatio, double targetWidth, double proportionChange) |
| int | getFullConditionalType () |
Public Member Functions inherited from SpatialSEIR::FullConditional | |
| virtual | ~FullConditional () |
| double | acceptanceRatio () |
| void | setSamplerType (int type) |
Public Attributes | |
| ModelContext ** | context |
| CompartmentalModelMatrix ** | I_star |
| CompartmentalModelMatrix ** | E |
| InitData ** | A0 |
| double ** | p_ei |
| double ** | gamma_ei |
| long double * | value |
| double * | priorAlpha |
| double * | priorBeta |
Public Attributes inherited from SpatialSEIR::ParameterFullConditional | |
| int * | varLen |
Public Attributes inherited from SpatialSEIR::FullConditional | |
| double * | sliceWidth |
| std::vector< Sampler * > * | samplers |
| Sampler ** | currentSampler |
| int * | samples |
| int * | accepted |
FC_Gamma_EI gives the full conditional distribution of gamma_ei, the parameter driving the probability that an exposed individual becomes infectious at a given time point, p_ei.
| SpatialSEIR::FC_Gamma_EI::FC_Gamma_EI | ( | ModelContext * | _context, |
| CompartmentalModelMatrix * | _I_star, | ||
| CompartmentalModelMatrix * | _E, | ||
| InitData * | _A0, | ||
| double * | _p_ei, | ||
| double * | _gamma_ei, | ||
| double | _priorAlpha, | ||
| double | _priorBeta, | ||
| double | sliceWidth | ||
| ) |
| SpatialSEIR::FC_Gamma_EI::~FC_Gamma_EI | ( | ) |
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virtual |
Implements SpatialSEIR::ParameterFullConditional.
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virtual |
Implements SpatialSEIR::ParameterFullConditional.
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virtual |
Implements SpatialSEIR::ParameterFullConditional.
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virtual |
Implements SpatialSEIR::ParameterFullConditional.
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virtual |
|
virtual |
Implements SpatialSEIR::ParameterFullConditional.
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virtual |
Implements SpatialSEIR::ParameterFullConditional.
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virtual |
Implements SpatialSEIR::ParameterFullConditional.
| InitData** SpatialSEIR::FC_Gamma_EI::A0 |
| ModelContext** SpatialSEIR::FC_Gamma_EI::context |
| CompartmentalModelMatrix** SpatialSEIR::FC_Gamma_EI::E |
| double** SpatialSEIR::FC_Gamma_EI::gamma_ei |
| CompartmentalModelMatrix** SpatialSEIR::FC_Gamma_EI::I_star |
| double** SpatialSEIR::FC_Gamma_EI::p_ei |
| double* SpatialSEIR::FC_Gamma_EI::priorAlpha |
| double* SpatialSEIR::FC_Gamma_EI::priorBeta |
| long double* SpatialSEIR::FC_Gamma_EI::value |
1.8.6