SpatialSEIR::IndexedCompartmentSliceSampler Class Reference

#include <LSS_Samplers.hpp>

Inheritance diagram for SpatialSEIR::IndexedCompartmentSliceSampler:

Public Member Functions
	IndexedCompartmentSliceSampler (ModelContext *context, CompartmentFullConditional *compartmentFC, int *compartmentData)
void	drawSample ()
int	getSamplerType ()
	~IndexedCompartmentSliceSampler ()
Public Member Functions inherited from SpatialSEIR::Sampler
virtual	~Sampler ()

Public Attributes
ModelContext **	context
CompartmentFullConditional **	compartmentFC
int **	indexLength
int **	compartmentData
int **	indexList

Detailed Description

The IndexedCompartmentSliceSampler class is child of the Sampler class which draws samples from the posterior distribution of the various transition compartments using a partial slice sampling proposal, with proposal indices determined by the ModelContext to which it belongs. This sampler is designed to reduce autocorrelation by letting all compartments move together using the same indices.

Constructor & Destructor Documentation

SpatialSEIR::IndexedCompartmentSliceSampler::IndexedCompartmentSliceSampler	(	ModelContext *	context,
		CompartmentFullConditional *	compartmentFC,
		int *	compartmentData
	)

SpatialSEIR::IndexedCompartmentSliceSampler::~IndexedCompartmentSliceSampler

(

)

Member Function Documentation

void SpatialSEIR::IndexedCompartmentSliceSampler::drawSample ( )

virtual

Implements SpatialSEIR::Sampler.

int SpatialSEIR::IndexedCompartmentSliceSampler::getSamplerType ( )

virtual

Implements SpatialSEIR::Sampler.

Member Data Documentation

int** SpatialSEIR::IndexedCompartmentSliceSampler::compartmentData

CompartmentFullConditional** SpatialSEIR::IndexedCompartmentSliceSampler::compartmentFC

ModelContext** SpatialSEIR::IndexedCompartmentSliceSampler::context

int** SpatialSEIR::IndexedCompartmentSliceSampler::indexLength

int** SpatialSEIR::IndexedCompartmentSliceSampler::indexList

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The documentation for this class was generated from the following file:

• libSpatialSEIR/include/LSS_Samplers.hpp