| A0 | SpatialSEIR::ModelContext | |
| avgP_RS() | SpatialSEIR::ModelContext | |
| avgP_SE() | SpatialSEIR::ModelContext | |
| avgP_SE(int tpt) | SpatialSEIR::ModelContext | |
| beta | SpatialSEIR::ModelContext | |
| beta_fc | SpatialSEIR::ModelContext | |
| betaPrs | SpatialSEIR::ModelContext | |
| betaPrs_fc | SpatialSEIR::ModelContext | |
| buildModel() | SpatialSEIR::ModelContext | |
| cacheP_SE_Calculation() | SpatialSEIR::ModelContext | |
| calculateE_CPU() | SpatialSEIR::ModelContext | |
| calculateE_CPU(int startLoc, int startTime) | SpatialSEIR::ModelContext | |
| calculateE_givenI_CPU() | SpatialSEIR::ModelContext | |
| calculateE_givenI_CPU(int startLoc, int startTime) | SpatialSEIR::ModelContext | |
| calculateE_OCL() | SpatialSEIR::ModelContext | |
| calculateEffectiveR0Components(int t) | SpatialSEIR::ModelContext | |
| calculateG(int t) | SpatialSEIR::ModelContext | |
| calculateGenericCompartment_CPU(CompartmentalModelMatrix *comp, int *comp0, CompartmentalModelMatrix *compStarAdd, CompartmentalModelMatrix *compStarSub) | SpatialSEIR::ModelContext | |
| calculateGenericCompartment_CPU(CompartmentalModelMatrix *comp, int *comp0, CompartmentalModelMatrix *compStarAdd, CompartmentalModelMatrix *compStarSub, int startLoc, int startTime) | SpatialSEIR::ModelContext | |
| calculateGenericCompartment_OCL(int *comp, int *comp0, int *compStarAdd, int *compStarSub) | SpatialSEIR::ModelContext | |
| calculateI_CPU() | SpatialSEIR::ModelContext | |
| calculateI_CPU(int startLoc, int startTime) | SpatialSEIR::ModelContext | |
| calculateI_givenR_CPU() | SpatialSEIR::ModelContext | |
| calculateI_givenR_CPU(int startLoc, int startTime) | SpatialSEIR::ModelContext | |
| calculateI_OCL() | SpatialSEIR::ModelContext | |
| calculateIntegratedG(int t) | SpatialSEIR::ModelContext | |
| calculateP_EI_CPU() | SpatialSEIR::ModelContext | |
| calculateP_IR_CPU() | SpatialSEIR::ModelContext | |
| calculateP_RS_CPU() | SpatialSEIR::ModelContext | |
| calculateP_SE_CPU() | SpatialSEIR::ModelContext | |
| calculateP_SE_CPU(int startLoc, int startTime) | SpatialSEIR::ModelContext | |
| calculateP_SE_OCL() | SpatialSEIR::ModelContext | |
| calculateR0Components(int t) | SpatialSEIR::ModelContext | |
| calculateR_CPU() | SpatialSEIR::ModelContext | |
| calculateR_CPU(int startLoc, int startTime) | SpatialSEIR::ModelContext | |
| calculateR_givenS_CPU() | SpatialSEIR::ModelContext | |
| calculateR_givenS_CPU(int startLoc, int startTime) | SpatialSEIR::ModelContext | |
| calculateR_OCL() | SpatialSEIR::ModelContext | |
| calculateS_CPU() | SpatialSEIR::ModelContext | |
| calculateS_CPU(int startLoc, int startTime) | SpatialSEIR::ModelContext | |
| calculateS_givenE_CPU() | SpatialSEIR::ModelContext | |
| calculateS_givenE_CPU(int startLoc, int startTime) | SpatialSEIR::ModelContext | |
| calculateS_OCL() | SpatialSEIR::ModelContext | |
| checkCompartmentBounds() | SpatialSEIR::ModelContext | |
| compartmentCache | SpatialSEIR::ModelContext | |
| config | SpatialSEIR::ModelContext | |
| configureIterationTasks() | SpatialSEIR::ModelContext | |
| decorrelationStepTask | SpatialSEIR::ModelContext | |
| E | SpatialSEIR::ModelContext | |
| E0_fc | SpatialSEIR::ModelContext | |
| E_star | SpatialSEIR::ModelContext | |
| E_star_fc | SpatialSEIR::ModelContext | |
| estimateEffectiveR0() | SpatialSEIR::ModelContext | |
| estimateEffectiveR0(int t) | SpatialSEIR::ModelContext | |
| estimateR0() | SpatialSEIR::ModelContext | |
| estimateR0(int t) | SpatialSEIR::ModelContext | |
| eta | SpatialSEIR::ModelContext | |
| fileProvider | SpatialSEIR::ModelContext | |
| gamma | SpatialSEIR::ModelContext | |
| gamma_ei | SpatialSEIR::ModelContext | |
| gamma_ei_fc | SpatialSEIR::ModelContext | |
| gamma_ir | SpatialSEIR::ModelContext | |
| gamma_ir_fc | SpatialSEIR::ModelContext | |
| getCompartmentSamplingMode() | SpatialSEIR::ModelContext | |
| getParameterSamplingMode() | SpatialSEIR::ModelContext | |
| I | SpatialSEIR::ModelContext | |
| I0_fc | SpatialSEIR::ModelContext | |
| I_star | SpatialSEIR::ModelContext | |
| I_star_overdispersed_fc | SpatialSEIR::ModelContext | |
| indexLength | SpatialSEIR::ModelContext | |
| indexList | SpatialSEIR::ModelContext | |
| isPopulated | SpatialSEIR::ModelContext | |
| iterationTasks | SpatialSEIR::ModelContext | |
| model | SpatialSEIR::ModelContext | |
| ModelContext() | SpatialSEIR::ModelContext | |
| N | SpatialSEIR::ModelContext | |
| numIterations | SpatialSEIR::ModelContext | |
| oclProvider | SpatialSEIR::ModelContext | |
| offset | SpatialSEIR::ModelContext | |
| p_ei | SpatialSEIR::ModelContext | |
| p_ir | SpatialSEIR::ModelContext | |
| p_rs | SpatialSEIR::ModelContext | |
| p_se | SpatialSEIR::ModelContext | |
| p_se_components | SpatialSEIR::ModelContext | |
| performHybridSE_EI_UpdateTask | SpatialSEIR::ModelContext | |
| phi | SpatialSEIR::ModelContext | |
| phi_fc | SpatialSEIR::ModelContext | |
| populate(InitData *_A0, covariateArgs *xArgs, covariateArgs *xPrsArgs, double *offset, int *Y, compartmentArgs *S_starArgs, compartmentArgs *E_starArgs, compartmentArgs *I_starArgs, compartmentArgs *R_starArgs, scaledDistanceArgs *scaledDistArgs, double *rho, double *phi, double *beta, double *gamma_ei, double *gamma_ir, double *betaPrs, int *N, sliceParameters *sliceWidths, priorControl *priorInformation, modelConfiguration _config) | SpatialSEIR::ModelContext | |
| printFCValues() | SpatialSEIR::ModelContext | |
| R | SpatialSEIR::ModelContext | |
| R0_fc | SpatialSEIR::ModelContext | |
| R_star | SpatialSEIR::ModelContext | |
| R_star_fc | SpatialSEIR::ModelContext | |
| random | SpatialSEIR::ModelContext | |
| rho | SpatialSEIR::ModelContext | |
| rho_fc | SpatialSEIR::ModelContext | |
| runSimulation(int nIterations, bool verbose, bool debug) | SpatialSEIR::ModelContext | |
| S | SpatialSEIR::ModelContext | |
| S0_fc | SpatialSEIR::ModelContext | |
| S_star | SpatialSEIR::ModelContext | |
| S_star_fc | SpatialSEIR::ModelContext | |
| scaledDistMatrices | SpatialSEIR::ModelContext | |
| setCompartmentSamplingMode(int mode) | SpatialSEIR::ModelContext | |
| setParameterSamplingMode(int mode) | SpatialSEIR::ModelContext | |
| setRandomSeed(unsigned int seedValue) | SpatialSEIR::ModelContext | |
| setSamplingIndicesTask | SpatialSEIR::ModelContext | |
| simulationIter(bool verbose, bool debug) | SpatialSEIR::ModelContext | |
| singleLocation | SpatialSEIR::ModelContext | |
| tmpContainer | SpatialSEIR::ModelContext | |
| totalE() | SpatialSEIR::ModelContext | |
| totalE(int tpt) | SpatialSEIR::ModelContext | |
| totalE_star() | SpatialSEIR::ModelContext | |
| totalE_star(int tpt) | SpatialSEIR::ModelContext | |
| totalI() | SpatialSEIR::ModelContext | |
| totalI(int tpt) | SpatialSEIR::ModelContext | |
| totalI_star() | SpatialSEIR::ModelContext | |
| totalI_star(int tpt) | SpatialSEIR::ModelContext | |
| totalR() | SpatialSEIR::ModelContext | |
| totalR(int tpt) | SpatialSEIR::ModelContext | |
| totalR_star() | SpatialSEIR::ModelContext | |
| totalR_star(int tpt) | SpatialSEIR::ModelContext | |
| totalS() | SpatialSEIR::ModelContext | |
| totalS(int tpt) | SpatialSEIR::ModelContext | |
| totalS_star() | SpatialSEIR::ModelContext | |
| totalS_star(int tpt) | SpatialSEIR::ModelContext | |
| updateSamplingParameters(double desiredRatio, double targetWidth, double proportionChange) | SpatialSEIR::ModelContext | |
| X | SpatialSEIR::ModelContext | |
| X_pRS | SpatialSEIR::ModelContext | |
| Y | SpatialSEIR::ModelContext | |
| ~ModelContext() | SpatialSEIR::ModelContext | |
1.8.6
