CompartmentalModelMatrix.hpp

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/*Copyright 2014, Grant Brown*/

#ifndef SPATIALSEIR_INCLUDEFILES
#define SPATIALSEIR_INCLUDEFILES

#include<math.h>
#include<cstring>
#include<vector>
#endif

#ifndef COMPARTMENTAL_MODEL_MATRIX_INC
#define COMPARTMENTAL_MODEL_MATRIX_INC
#include<ModelContext.hpp>

namespace SpatialSEIR
{
    struct compartmentArgs
    {
        int *inData;
        int *inRow;
        int *inCol;
        double steadyStateConstraintPrecision;
    };

    class CompartmentalModelMatrix
    {
        public:
            // Methods
            
            int genFromDataStream(int *indata, int *inrow, int *incol);
            int createEmptyCompartment(int *inrow, int *incol);
            long unsigned int marginSum(int margin, int slice);
            ~CompartmentalModelMatrix();

            // Attributes

            int *data;
            int *nrow;
            int *ncol;
            IntMatrixMapType* dataMatrix;

    };
}

#endif